Training materials
Authors: Aidan Budd or Bernardo Clavijo or Bruno Gaeta or Dave Clements or Nate Coraor or Wendi Bacon
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hands-on tutorial
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x Python Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
slides
Gearing towards production
• beginnerGalaxy Server administration -
slides
Galaxy Monitoring
• beginnerGalaxy Server administration -
slides
Galaxy Troubleshooting
• beginnerGalaxy Server administration -
slides
Controlling Galaxy with systemd or Supervisor
• beginnerGalaxy Server administration -
slides
Galactic Database
• beginnerGalaxy Server administration