Training materials
Authors: Aidan Budd or Bazante Sanders or Boris Steipe or Dave Clements or Donny Vrins or Egon Willighagen or Jared Simpson or carpentries-incubator
-
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
Blog post
Making BridgeDb Derby files with Groovy
•• intermediateBridgeDb Groovy -
carpentries-incubator/R-ecology-lesson-intermediate
-
carpentries-incubator/gitlab-novice
-
carpentries-incubator/fair-for-leaders
-
carpentries-incubator/python_packaging
-
carpentries-incubator/scrna-seq-analysis