Training materials
Authors: Aidan Budd or Anthony Bretaudeau or Dave Clements or Emma Griffiths or Erwan Corre
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hands-on tutorial
Genome annotation with Helixer
•• intermediateGenome Annotation eukaryota helixer jbrowse1 -
hands-on tutorial
Creating an Official Gene Set
• beginnerGenome Annotation apollo2 gmod work-in-progress -
hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
16S Microbial Analysis with mothur (short)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
slides
Introduction to Genome Annotation
•• intermediateGenome Annotation -
slides
Introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses -
hands-on tutorial
Genome Assembly Quality Control
•• intermediateSequence assembly Assembly assembly quality control -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
hands-on tutorial
Refining Genome Annotations with Apollo (eukaryotes)
•• intermediateGenome Annotation apollo2 cyoa eukaryote gmod jbrowse1 -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology