Chip-seq: Discovering motifs in peaks with RSAT

Read mapping: from raw reads to aligned reads.
Peak calling: from aligned reads to regions/peaks of high read density.
ChIP-seq annotation

    Identification of genes related to the peaks.
    Profiles of ChIP-seq reads around reference points (TSS, histone marks,).
    Functional enrichment of the genes related to the peaks.

Keywords: Chip Seq, Motif Analysis, NGS

Chip-seq: Discovering motifs in peaks with RSAT https://tess.elixir-europe.org/materials/chip-seq-discovering-motifs-in-peaks-with-rsat Read mapping: from raw reads to aligned reads. Peak calling: from aligned reads to regions/peaks of high read density. ChIP-seq annotation Identification of genes related to the peaks. Profiles of ChIP-seq reads around reference points (TSS, histone marks,). Functional enrichment of the genes related to the peaks. Chip Seq, Motif Analysis, NGS