Chip-seq: Discovering motifs in peaks with RSAT

Read mapping: from raw reads to aligned reads.
Peak calling: from aligned reads to regions/peaks of high read density.
ChIP-seq annotation
Identification of genes related to the peaks.
Profiles of ChIP-seq reads around reference points (TSS, histone marks,).
Functional enrichment of the genes related to the peaks.

Keywords: Chip Seq, Motif Analysis, NGS

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