Showing 23 materials
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1
e-learning
Genome Assembly Quality Control
•• intermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
2
Galaxy Introduction for Life Scientists
• beginnerbasic research experimental biology interoperability next generation sequencing reproducibility training michael stadler group -
3
e-learning
A short introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses español -
4
e-learning
Galaxy Basics for genomics
• beginnerIntroduction to Galaxy Analyses -
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NGS - Quality Control, Alignment, Visualisation
• beginnertraining genes and genomes next generation sequencing environmental science medicine and health -
6
slides
Genome assembly and assembly QC - Introduction short version
• beginnerSequence assembly Assembly -
7
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
8
e-learning
Assembly of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome assembly metagenomics microgalaxy -
9
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
10
e-learning
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
11
e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
12
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly -
13
e-learning
ERGA post-assembly QC
• beginnerSequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants -
14
Genome Sequencing (Bioinformatics II)
life-sciences computer-science health-informatics algorithms
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15
e-learning
Genome assembly using PacBio data
•• intermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
16
e-learning
Large genome assembly and polishing
• beginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
17
e-learning
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
18
e-learning
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote -
19
e-learning
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly biodiversity covid19 -
20
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio -
21
e-learning
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• intermediateSequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio -
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Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions
• beginnerbiodiversity non model organisms evolution and phylogeny genes and genomes comparative genomics evolutionary biology training marc robinson-rechavi group robert waterhouse group christophe dessimoz group -
23
Tutorial, Slides, Scripts
Genome assembly, annotation and comparative genomics - EBP-Nor workshop 2024
Bioinformatics Genomics Comparative genomics Assembly Annotation
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