Organizer: Genomics Core KU Leuven/UZ Leuven

Host institution: KU Leuven

Start: Friday, 31 March 2017 @ 08:30

End: Friday, 31 March 2017 @ 17:00

Contact: alvaro.cortes@uzleuven.be

Venue: Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven

City: Leuven

County: Vlaams-Brabant

Country: Belgium

Postcode: 3000

Scientific topic: High-throughput sequencing

Target audience:
  • Post-Docs
  • PhD
Description:

Introduction to Next Generation Sequencing Bioinformatics Workshop

MARCH31, 2017 (08:30-17:00)

Lokaal H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven

Preliminary Program

08:30 – 9:00 - Welcome coffee

09:00 – 09:05 – Welcome by Prof. Joris Vermeesch

09:05 - 10:00 - Overview of NGS sequencing methods and technologies

Session lead: Jeroen Van Houdt - Genomics Core Leuven

10:00 - 11:00 – Understanding NGS raw data: Fastq format, quality checking, trimming, adapter clipping

Session lead: Koen Herten - Genomics Core Leuven

11:00 – 11:30 – Coffee break

11:30 – 12:30 – Read mapping and alignment: SAM format, alignment tools, visualization on IGV

Session lead: Koen Herten - Genomics Core Leuven

12:30 – 13:30 – Lunch

13:30 – 15:00 – Variant calling: tools, GATK, quality scores, baserecalibration, VCF files

Session lead: Erika Souche & Luc Dehaspe - Genomics Core Leuven

15:00 – 15:30 – Coffee break

15:30 – 17:00 – RNA-Seq data: Differential expression principles, counting, DE table interpretation

Session lead: Alvaro Cortés Calabuig – Genomics Core Leuven

Places are limited and are assigned on a first-come first-serve policy. The workshop is free of charge for students and members of academic institutions in Belgium. The cost for members of non-academic institutions (VIB, IMEC, pharma, etc.) is 100€. Sandwiches will be offered at lunch time. Late cancellations are subject to an administrative fee of 50€. Participants are required to bring their own laptops. For inquiries, please send an email to alvaro.cortes@uzleuven.be.

Event type:
  • Workshops and courses

Capacity: 25

Eligibility:
  • First come first served
Introduction to Next Generation Sequencing Bioinformatics Workshop https://tess.elixir-europe.org/events/introduction-to-next-generation-sequencing-bioinformatics-workshop Introduction to Next Generation Sequencing Bioinformatics Workshop MARCH31, 2017 (08:30-17:00) Lokaal H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Preliminary Program 08:30 – 9:00 - Welcome coffee 09:00 – 09:05 – Welcome by Prof. Joris Vermeesch 09:05 - 10:00 - Overview of NGS sequencing methods and technologies Session lead: Jeroen Van Houdt - Genomics Core Leuven 10:00 - 11:00 – Understanding NGS raw data: Fastq format, quality checking, trimming, adapter clipping Session lead: Koen Herten - Genomics Core Leuven 11:00 – 11:30 – Coffee break 11:30 – 12:30 – Read mapping and alignment: SAM format, alignment tools, visualization on IGV Session lead: Koen Herten - Genomics Core Leuven 12:30 – 13:30 – Lunch 13:30 – 15:00 – Variant calling: tools, GATK, quality scores, baserecalibration, VCF files Session lead: Erika Souche & Luc Dehaspe - Genomics Core Leuven 15:00 – 15:30 – Coffee break 15:30 – 17:00 – RNA-Seq data: Differential expression principles, counting, DE table interpretation Session lead: Alvaro Cortés Calabuig – Genomics Core Leuven Places are limited and are assigned on a first-come first-serve policy. The workshop is free of charge for students and members of academic institutions in Belgium. The cost for members of non-academic institutions (VIB, IMEC, pharma, etc.) is 100€. Sandwiches will be offered at lunch time. Late cancellations are subject to an administrative fee of 50€. Participants are required to bring their own laptops. For inquiries, please send an email to alvaro.cortes@uzleuven.be. 2017-03-31 08:30:00 UTC 2017-03-31 17:00:00 UTC Genomics Core KU Leuven/UZ Leuven Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven, Leuven, Belgium Herestraat 49, Rooml H04.212, ON2, Campus Gasthuisberg, KU Leuven, Leuven Leuven Vlaams-Brabant Belgium 3000 High-throughput sequencing KU Leuven alvaro.cortes@uzleuven.be [] Post-DocsPhD 25 workshops_and_courses first_come_first_served []