This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:

the Nextflow software
the nf-core community and pipelines
What is a singularity image ?
Where are installed the nf-core workflows ? Which version do I use ?
How to run a workflow and which config file is used ?
Which kind of error I can get ?
How to resume failed jobs?
How to handle genome indexes ?
How to monitor my process and then well configure my workflow ?
How do you best adjust CPU and RAM reservations?
This is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.

This training is focused on practice. It consists of several modules with a large variety of exercises:

Start at 09:00 am
End at 17:00 pm