Content Providers
Keywords: Cloud or Data sharing or Data spaces or EeLP or EuPA or Pathway analysis or biomolecular
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ELIXIR Slovenia
Slovenian national ELIXIR node
5 training materials0 events (19 past events)ELIXIR Slovenia https://elixir.mf.uni-lj.si https://tess.elixir-europe.org/content_providers/elixir-slovenia Slovenian national ELIXIR node /system/content_providers/images/000/000/103/original/ELIXIR_SLOVENIA_white_background.png?1544083070 -
BioExcel
BioExcel is the leading European Centre of Excellence for Computational Biomolecular Research. BioExcel develops some of the most popular open-source applications for modelling and simulations of biomolecular systems along with user-friendly workflows and container solutions. The software stack...
5 events (12 past events)BioExcel http://bioexcel.eu/ https://tess.elixir-europe.org/content_providers/bioexcel BioExcel is the leading European Centre of Excellence for Computational Biomolecular Research. BioExcel develops some of the most popular open-source applications for modelling and simulations of biomolecular systems along with user-friendly workflows and container solutions. The software stack comes with great performance and scalability capabilities for extreme-scale utilization of the world's largest high-performance computing (HPC) and high-throughput computing (HTC) compute resource. /system/content_providers/images/000/000/053/original/BioExcel_logo_payoff.png?1470306206 -
Barcelona Supercomputing Center (BSC)
BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005,...
8 training materials0 events (9 past events)Barcelona Supercomputing Center (BSC) http://www.bsc.es https://tess.elixir-europe.org/content_providers/barcelona-supercomputing-center-bsc BSC is at the service of the international scientific communιty and of industry that requires HPC resources. Our multidisciplinary research team and our computational facilities –including MareNostrum– make BSC an international centre of excellence in e-Science. Since its establishment in 2005, BSC has developed an active role in fostering HPC in Spain and Europe as an essential tool for international competitiveness in science and engineering. The centre manages the Red Española de Supercomputación (RES), and is a hosting member of the Partnership for Advanced Computing in Europe (PRACE) initiative. We actively participate in the main European HPC initiatives, in close cooperation with other European supercomputing centres. With a total staff of more than 500 R&D experts and professionals, BSC has been successful in attracting talent, and our research focuses on four fields: Computer Sciences, Life Sciences, Earth Sciences and Computer Applications in Science and Engineering. /system/content_providers/images/000/000/636/original/BSC-blue-large.jpg?1632400405 -
Department of Bioinformatics - BiGCaT, Maastricht University
The department of Bioinformatics-BiGCaT is part of NUTRIM the school of Nutrition and Translational Research in Metabolism at Maastricht University, the Netherlands. It was founded in 2001 by Prof. dr. Chris Evelo aiming at employing bioinformatics approaches in systems biology to integrate...
8 training materials0 events (1 past event)Department of Bioinformatics - BiGCaT, Maastricht University https://www.bigcat.unimaas.nl/ https://tess.elixir-europe.org/content_providers/department-of-bioinformatics-bigcat-maastricht-university The department of Bioinformatics-BiGCaT is part of NUTRIM the school of Nutrition and Translational Research in Metabolism at Maastricht University, the Netherlands. It was founded in 2001 by Prof. dr. Chris Evelo aiming at employing bioinformatics approaches in systems biology to integrate experimental data and data with current knowledge. Integrative Systems Biology is being developed and applied in various research fields. The department has four core research areas; 1) Metabolic diseases, 2) Micronutrients, 3) Toxicity and risk Assessment and 4) Rare diseases. Within these areas different types of data, like transcriptomics, proteomics, metabolomics and (epi)genomics data, are collected , integrated and combined with existing knowledge /system/content_providers/images/000/000/093/original/logo_05_72dpi.gif?1528366508 -
ELIXIR-SI eLearning Platform (EeLP)
ELIXIR-SI eLearning Platform (EeLP) is a learning management system (LMS) continuously administered and maintained by ELIXIR Slovenia.
EeLP enables all-in-one-place access to materials, tools and services for any course, tutorial or webinar that is hosted on the platform.
6 training materials0 events (8 past events)ELIXIR-SI eLearning Platform (EeLP) https://elixir.mf.uni-lj.si/ https://tess.elixir-europe.org/content_providers/elixir-si-elearning-platfrom-eelp ELIXIR-SI eLearning Platform (EeLP) is a learning management system (LMS) continuously administered and maintained by ELIXIR Slovenia. EeLP enables all-in-one-place access to materials, tools and services for any course, tutorial or webinar that is hosted on the platform. /system/content_providers/images/000/000/108/original/eelp-logo-with-slogan.jpg?1544007788 -
Proteomics Academy
EuPA Educational Committee
The EuPA Educational Committee supports educational initiatives in proteomics. Our aim is to make proteomics techniques affordable to all. We designed this website to provide the scientific community with free and open educational material.
EuBICThe European...
4 training materials0 events (1 past event)Proteomics Academy http://www.proteomics-academy.org/ https://tess.elixir-europe.org/content_providers/proteomics-academy EuPA Educational Committee The EuPA Educational Committee supports educational initiatives in proteomics. Our aim is to make proteomics techniques affordable to all. We designed this website to provide the scientific community with free and open educational material. EuBIC The European Bioinformatics Community (EuBIC) is a EuPA initiative for user-oriented bioinformatics. Our aim is to improve bioinformatics through the set-up of community driven dynamics improving the funding, publication, and work in user-oriented bioinformatics. In order to better disseminate bioinformatics among the scientific community, we also distribute educational material freely through this website, organize teaching, and a yearly conference. We function on a spontaneous voluntary basis, anyone is free to join, just contact us to stay tuned on the latest events! The Proteomics Academy is a joint effort of the European Proteomics Association (EuPA) educational committee and the European Bioinformatics Community (EuBIC) initiative. Our aim is to foster interaction between scientists interested in proteomics in an open, constructive, and collaborative way. We will be happy to answer your questions, receive your suggestions, and we welcome anyone wanting to join this community effort! /system/content_providers/images/000/000/064/original/97d05c_c3fb133973c34e318b81d122091dd238.png?1484056294 -
Seqera Labs
Founded by the creators of Nextflow, Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem.
We organize training events for your team or organization. These are intended for...
0 events (1 past event)Seqera Labs http://www.seqera.io https://tess.elixir-europe.org/content_providers/seqera-labs Founded by the creators of [Nextflow](http://www.nextflow.io), Seqera Labs mission is to foster the adoption of professional open source software and strengthen the community effort around the Nextflow ecosystem. We organize training events for your team or organization. These are intended for anyone who wishes to learn about the technology, starting from basic through to advanced concepts. Our most popular intensive two-day course includes topics on containerization, cloud deployment, Git integration and best practices for reproducibility. /system/content_providers/images/000/000/111/original/Seqera_Labs_-_grey.png?1553771707 -
WikiPathways
WikiPathways is a database of biological pathways maintained by and for the scientific community.
1 training materialWikiPathways https://www.wikipathways.org https://tess.elixir-europe.org/content_providers/wikipathways WikiPathways is a database of biological pathways maintained by and for the scientific community. /system/content_providers/images/000/000/660/original/wikipathways-logo-horizontal.svg?1668072305 -
Fraunhofer FIT
As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT...
1 training materialFraunhofer FIT https://www.fit.fraunhofer.de/en.html https://tess.elixir-europe.org/content_providers/fraunhofer-fit As a partner for digitization, Industry 4.0 and the Internet of Things, the Fraunhofer Institute for Applied Information Technology FIT has been developing IT solutions tailored to people and seamlessly integrated into business processes for almost 40 years. As a driving force of innovation, FIT not only provides guidance, but also shapes the digital transformation in business, the environment and society. FIT’s interdisciplinary R&D teams are drawn from our staff of around 350 scientists from computer science, social science, business administration, economics, psychology, and engineering. They bring their expertise in designing and implementing information technology systems to bear on problems and needs from different areas of life. Our specific strength is our holistic approach to system development – from concept validation to implementation. We strategically evolve our expertise in IT, specific application fields, and our scientific excellence with the aim to be ahead of the market for our customers from industry and administration. /system/content_providers/images/000/000/661/original/fit.svg?1670846086 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://tess.elixir-europe.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557