Content Providers
Keywords: RNA-Seq or DNA or FAIR or Ontologies or open science or product safety
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ELXIR-UK DaSH
In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford.
The project aims to embed Research Data...
70 training materials0 events (6 past events)ELXIR-UK DaSH https://elixiruknode.org/projects/elixir-uk-dash/ https://tess.elixir-europe.org/content_providers/elxir-uk-dash In 2021, ELIXIR-UK was granted a UKRI award for the ELIXIR-UK DaSH Fellowship. The University of Bradford leads the project with a delivery team at Cardiff University, the Earlham Institute, the University of Manchester, and the University of Oxford. The project aims to embed Research Data Management (RDM) know-how into UK universities and institutes by producing and delivering training in FAIR data stewardship using ELIXIR-UK knowledge and resources, such as the RDMkit and the FAIR Cookbook. It focuses on building capacity and professionalising data stewardship while leveraging the local expertise within diverse UK institutions – creating a data management culture change from within the institutions. /system/content_providers/images/000/000/652/original/elixir-uk-dash-logo.svg?1660752689 -
ELIXIR Norway
6 training materials0 events (22 past events)ELIXIR Norway http://elixir-norway.org https://tess.elixir-europe.org/content_providers/elixir-norway /system/content_providers/images/000/000/087/original/elixir_norway_white_background.png?1530281111 -
NanoCommons
NanoCommons will deliver a sustainable and openly accessible nanoinformatics framework (knowledgebase and integrated computational tools, supported by expert advice, data interpretation and training), for assessment of the risks of NMs, their products and their formulations. NanoCommons combines...
9 training materials0 events (21 past events)NanoCommons https://www.nanocommons.eu/ https://tess.elixir-europe.org/content_providers/nanocommons NanoCommons will deliver a sustainable and openly accessible nanoinformatics framework (knowledgebase and integrated computational tools, supported by expert advice, data interpretation and training), for assessment of the risks of NMs, their products and their formulations. NanoCommons combines Joint Research Activities to implement the nanoinformatics Knowledge Commons, Networking Activities to facilitate engagement with the research community, industry and regulators, and provision of funded Access to the nanoinformatics tools via funded calls for Transnational Access. /system/content_providers/images/000/000/099/original/NanoCommons-Logo-Sphere-Trans-White-circle-512px.png?1650899421 -
CINECA PROJECT
CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon...
17 training materials0 events (3 past events)CINECA PROJECT https://www.cineca-project.eu/ https://tess.elixir-europe.org/content_providers/cineca CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon 2020 programme and the Canadian Institutes of Health Research. /system/content_providers/images/000/000/140/original/CINECA_logo.png?1589875546 -
eNanoMapper
eNanoMapper developed a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs) based on open standards, ontologies and an interoperable design to enable a more effective, integrated approach to European research in nanotechnology. eNanoMapper supports...
10 training materialseNanoMapper http://enanomapper.net/ https://tess.elixir-europe.org/content_providers/enanomapper eNanoMapper developed a computational infrastructure for toxicological data management of engineered nanomaterials (ENMs) based on open standards, ontologies and an interoperable design to enable a more effective, integrated approach to European research in nanotechnology. eNanoMapper supports the collaborative safety assessment for ENMs by creating a modular, extensible infrastructure for transparent data sharing, data analysis, and the creation of computational toxicology models for ENMs. eNanoMapper was funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no 604134. /system/content_providers/images/000/000/092/original/logo.png?1528313779 -
OpenRiskNet
The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials.
OpenRiskNet is
* a virtual research environment for...0 events (10 past events)OpenRiskNet https://openrisknet.org/ https://tess.elixir-europe.org/content_providers/openrisknet The main objective of OpenRiskNet is to develop an open e-Infrastructure providing resources and services to a variety of communities requiring risk assessment, including chemicals, cosmetic ingredients, therapeutic agents and nanomaterials. OpenRiskNet is * a virtual research environment for predictive toxicology and chemical and nanomaterial risk assessment, * harmonising access to data and facilitating interoperability of software, * easily deployable to single computers, public and in-house cloud solutions, * addressing the needs of industry and academic researchers, risk assessors, regulators and informed public. OpenRiskNet (Grant Agreement 731075) is a 3-years project funded by the European Commission within the Horizon2020 Programme /system/content_providers/images/000/000/097/original/ORN-Web_Logo3.png?1533933310 -
CodeRefinery
CodeRefinery acts as a hub for FAIR (Findable, Accessible, Interoperable, and Reusable) software practices. It currently focuses on the Nordic/Baltic countries, but aims to expand beyond this region. CodeRefinery aims to operate as a community project with support from academic...
0 events (4 past events)CodeRefinery https://coderefinery.org/ https://tess.elixir-europe.org/content_providers/coderefinery CodeRefinery acts as a hub for FAIR (Findable, Accessible, Interoperable, and Reusable) software practices. It currently focuses on the Nordic/Baltic countries, but aims to expand beyond this region. CodeRefinery aims to operate as a community project with support from academic organizations. CodeRefinery provides: - For organizations: an opportunity to pool competence and offer more training and development opportunities than they could individually. - For volunteers and the team: a community around teaching and opportunity for skill development, both in pedagogy and practical skills. - For learners: a welcoming and useful environment for learning many necessary practical skills that may otherwise not be explicitly taught. This can be through courses, hackathons, and the like. /system/content_providers/images/000/000/639/original/d943f5d28a6cbba400.png?1645778483 -
University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH)
The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and...
0 events (2 past events)University of Leicester Bioinformatics and Biostatistics Analysis Support Hub (BBASH) https://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/bbash https://tess.elixir-europe.org/content_providers/university-of-leicester-bioinformatics-and-biostatistics-analysis-support-hub-bbash The ongoing development of next generation sequencing (NGS) technologies has meant that vast amounts of sequencing data is being produced, with researchers increasingly wanting the capability and knowledge to analyse their own data. Over the past 3 years BBASH has developed a number of 1, 2 and 3 day hands-on, NGS analysis workshops designed specificially to meet the needs of laboratory based researchers with little or no experience of NGS data analysis and command line tools. The workshops are held at the University of Leicester's state of the art College Court Conference Centre and consist of introductory presentations followed by practical sessions where delegates will gain hands-on experience of analysing and interpreting real data. The BBASH trainers are University of Leicester bioinformaticians or researchers with many years experience in bioinformatics and bioinformatics training, having delivered many workshops across the UK and Europe. /system/content_providers/images/000/000/086/original/BBASHlogo.png?1509536575 -
Jalview
Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure.
Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has...
0 events (2 past events)Jalview http://www.jalview.org/ https://tess.elixir-europe.org/content_providers/jalview Jalview (www.jalview.org) is free-to-use sequence alignment and analysis visualisation software that links genomic variants, protein alignments and 3D structure. Protein, RNA and DNA data can be directly accessed from public databases (e.g. Pfam, Rfam, PDB, UniProt and ENA etc.). Jalview has editing and annotation functionality within a fully integrated, multiple window interface. The sequence alignment programs Clustal Omega, Muscle, MAFFT, ProbCons, T-COFFEE, ClustalW, MSA Prob and GLProb can be run directly from within Jalview. Jalview integrates protein secondary structure prediction (JPred), generate trees, assesses consensus and conservation across sequence families. Journal quality figures can be generated from the results. The Jalview Desktop will run on Mac, MS Windows, Linux and any other platform that supports Java. It has been developed in Geoff Barton's group (www.compbio.dundee.ac.uk) in the School of Life Sciences (www.lifesci.dundee.ac.uk) at the University of Dundee with funding from the BBSRC and the Wellcome Trust. /system/content_providers/images/000/000/091/original/logo-boxg.png?1524735946 -
Open Science MOOC
Open Science MOOC is a mission-driven project to help make ‘Open’ the default setting for all global research. We want to help create a welcoming and supporting community, with good tools, teachers, and role-models, and built upon a solid values-based foundation of freedom and equitable access to...
1 training materialOpen Science MOOC https://opensciencemooc.eu/ https://tess.elixir-europe.org/content_providers/open-science-mooc Open Science MOOC is a mission-driven project to help make ‘Open’ the default setting for all global research. We want to help create a welcoming and supporting community, with good tools, teachers, and role-models, and built upon a solid values-based foundation of freedom and equitable access to research. /system/content_providers/images/000/000/101/original/31343113?1536821365
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