Variables from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/03-var.md.

A Better Kind of Backup from https://github.com/swcarpentry/bc/tree/gh-pages/novice/git/01-backup.md.

A Better Kind of Backup from https://github.com/swcarpentry/bc/tree/gh-pages/novice/hg/01-backup.md.

Simple Patterns from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/02-simple-patterns.md.

HTML from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/webdata/03-html.md.

Make Reference from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/make/reference.md.

More Patterns from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/05-more-patterns.md.

Git Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/02-git.md.

Reusing Code from https://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/02-loop.md.

Introduction to Regular Expressions from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/01-intro-regex.md.

Variables from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/make/04-variables.md.

Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/01-perm.md.

More tools from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/06-more-tools.md.

Shell Scripts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/05-script.md.

R Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/06-R.md.

Open Science from https://github.com/swcarpentry/bc/tree/gh-pages/novice/git/04-open.md.

Conflicts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/hg/03-conflict.md.

Open Science from https://github.com/swcarpentry/bc/tree/gh-pages/novice/hg/04-open.md.

Loops from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/04-loop.md.

Automatic variables and wildcards from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/make/02-automatic-variables.md.

Collaborating from https://github.com/swcarpentry/bc/tree/gh-pages/novice/git/02-collab.md.

Basic Tasks from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/make/01-basics.md.

Files and Directories from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/01-filedir.md.

Defensive Programming from https://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/05-defensive.md.

Analyzing Patient Data from https://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/01-intro.md.

Instructor's Guide from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/guide.md.

Job Control from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/04-job.md.

Patterns from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/make/03-patterns.md.

Pipes and Filters from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/03-pipefilter.md.

Basic Relational Structure of Git Repositories from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/git/02-relational-structure.md.

Making Choices from https://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/04-cond.md.

Shell Variables from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/06-shellvar.md.

The Unix Shell from https://github.com/swcarpentry/bc/tree/gh-pages/novice/teaching/02-shell.md.

Version Control with Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/teaching/03-git.md.

Mercurial Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/02-hg.md.

Code Review from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/03-review.md.

Introduction from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/make/00-intro.md.

Exceptions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/08-exceptions.md.

Conversational Git from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/git/01-conversational-git.md.

Introducing Distributed Version Control, and Introducing Yourself to Git from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/git/00-intro.md.

A comparison of Make and doit from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/doit/make-vs-doit.md.

SQL Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/04-sql.md.

Creating Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/02-create.md.

Finding Things from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/06-find.md.

Numbers from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/09-numbers.md.

Python Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/03-python.md.

Programming with Python from https://github.com/swcarpentry/bc/tree/gh-pages/novice/teaching/04-python.md.

Operators from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/03-operators.md.

Using Databases and SQL from https://github.com/swcarpentry/bc/tree/gh-pages/novice/teaching/05-sql.md.

Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/02-ssh.md.

Introducing Version Control from https://github.com/swcarpentry/bc/tree/gh-pages/novice/hg/00-intro.md.

Creating Functions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/matlab/03-func.md.

Filename Expansion from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/shell/05-expansion.md.

Introducing the Shell from https://github.com/swcarpentry/bc/tree/gh-pages/novice/shell/00-intro.md.

General Advice from https://github.com/swcarpentry/bc/tree/gh-pages/novice/teaching/01-general.md.

Summing Up from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/08-summing-up.md.

Manual Pages from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/04-man.md.

Conflicts from https://github.com/swcarpentry/bc/tree/gh-pages/novice/git/03-conflict.md.

Shell Reference from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/01-shell.md.

Why I Teach from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/10-why.md.

Working Remotely from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/07-ssh.md.

Collaborating from https://github.com/swcarpentry/bc/tree/gh-pages/novice/hg/02-collab.md.

Further reading from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/make/05-futher-reading.md.

Branching in Git from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/01-branching.md.

Permissions from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/05-permissions.md.

Recognising prompts and how to exit from https://github.com/swcarpentry/bc/tree/gh-pages/novice/ref/05-prompts-exits.md.

Under the Hood from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/04-under-the-hood.md.

Introducing Version Control from https://github.com/swcarpentry/bc/tree/gh-pages/novice/git/00-intro.md.

Forking a Repository from https://github.com/swcarpentry/bc/tree/gh-pages/novice/extras/02-forking.md.

One last Wrinkle from https://github.com/swcarpentry/bc/tree/gh-pages/intermediate/regex/07-one-last-wrinkle.md.