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Sheffield Bioinformatics Core

The Sheffield Bioinformatics Core Facility aims to develop and advance the training and application of bioinformatics and computational biology to biological research, biomedical research and public health in Sheffield

Sheffield Bioinformatics Core https://tess.elixir-europe.org/content_providers/sheffield-bioinformatics-core The Sheffield Bioinformatics Core Facility aims to develop and advance the training and application of bioinformatics and computational biology to biological research, biomedical research and public health in Sheffield /system/content_providers/images/000/000/090/original/site-logo.png?1524672116
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Showing 10 upcoming events. Found 42 past events. View all results.

  • Identification of somatic and germline variants from tumor and normal sample pairs

    No date given

    Identification of somatic and germline variants from tumor and normal sample pairs https://tess.elixir-europe.org/events/identification-of-somatic-and-germline-variants-from-tumor-and-normal-sample-pairs [] [] [] workshops_and_courses [] []

  • Data Manipulation and Visualisation

    No date given

    United Kingdom

    Data Manipulation and Visualisation https://tess.elixir-europe.org/events/data-manipulation-and-visualisation-1f7c29d1-0f0d-4b92-986a-3ad3f71d9a71 R is a highly-regarded, free, software environment for statistical analysis, with many useful features that promote and facilitate reproducible research. In this course, we give an introduction to the R environment and explain how it can be used to import, manipulate and analyse tabular data. After the course you should feel confident to start exploring your own dataset using the materials and references provided. Sheffield Institute for Translational Neuroscience, United Kingdom Sheffield Institute for Translational Neuroscience United Kingdom [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

  • RNA-seq Analysis for Beginners

    3 July 2020

    Sheffield, United Kingdom

    RNA-seq Analysis for Beginners https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners-13c9f173-2fdd-4ea6-9005-58aa798bf289 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. 2020-07-03 08:30:00 UTC 2020-07-03 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

  • Introduction to Statistical Analysis

    No date given

    Sheffield, United Kingdom

    Introduction to Statistical Analysis https://tess.elixir-europe.org/events/introduction-to-statistical-analysis This course provides a refresher on the foundations of statistical analysis. Practicals are conducted using the ‘Shiny’ package; which provides an accessible interface to the R statistical language. Note that this is not a course for learning about the R statistical language itself. If you wish to learn more about R, please see other courses at the Sheffield Bioinformatics Core. Pam Liversidge Design Studio 1 - D06, Sheffield, United Kingdom Pam Liversidge Design Studio 1 - D06 Sheffield United Kingdom [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

  • Introduction to Unix for Bioinformatics

    No date given

    Sheffield, United Kingdom

    Introduction to Unix for Bioinformatics https://tess.elixir-europe.org/events/introduction-to-unix-for-bioinformatics This course offers an introduction to working with Linux. We will describe the Linux environment so that participants can start to utilize command-line tools and feel comfortable using a text-based way of interacting with a computer. We will take a problem-solving approach, drawing on types of tasks commonly encountered by Linux users when processing text files Pam Liversidge Design Studio 2 - E06, Sheffield, United Kingdom Pam Liversidge Design Studio 2 - E06 Sheffield United Kingdom S1 3JD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

  • FAQ

    No date given

    FAQ https://tess.elixir-europe.org/events/faq [] [] [] workshops_and_courses [] []

  • Introduction to RNA-seq analysis in R

    13 - 14 July 2020

    Sheffield, United Kingdom

    Introduction to RNA-seq analysis in R https://tess.elixir-europe.org/events/introduction-to-rna-seq-analysis-in-r-34ffdcbc-a5b7-49ac-afb9-7d338a38ea26 In this workshop, you will be learning how to analyse RNA-seq count data, using R. This will include reading the data into R, quality control and performing differential expression analysis and gene set testing, with a focus on the edgeR analysis workflow. You will learn how to generate common plots for analysis and visualisation of gene expression data, such as boxplots and heatmaps. You will also be learning how alignment and counting of raw RNA-seq data can be performed in R. This workshop is aimed at biologists interested in learning how to perform differential expression analysis of RNA-seq data when reference genomes are available.. 2020-07-13 08:30:00 UTC 2020-07-14 16:00:00 UTC The Diamond, Workroom 1, Sheffield, United Kingdom The Diamond, Workroom 1 Sheffield United Kingdom S3 7RD [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

  • RNA-seq Analysis for Beginners

    No date given

    RNA-seq Analysis for Beginners https://tess.elixir-europe.org/events/rna-seq-analysis-for-beginners-f007fe63-f303-43df-925a-e4f6c3c8e247 High-throughput RNA-sequencing is now the standard technique for quantifying transcript abundance in a biological sample of interest. In this course we will describe the processes that take place once you submit a library for RNA sequencing, and what data you should expect to receive from the Bioinformatics Core. We will describe the steps involved to go from sequencing library to a list of genes that show statistically significant differences between your biological conditions of interest. Practical sessions will use the user-friendly Galaxy interface (https://usegalaxy.org/) to demonstrate tasks such as alignment, quality control and assessing differential expression. We will also showcase some web sites you can use for enrichment and pathways analysis. [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []

  • External Training Courses

    No date given

    External Training Courses https://tess.elixir-europe.org/events/external-training-courses [] [] [] workshops_and_courses [] []

  • Statistical Analysis of Biological Data in R

    No date given

    Statistical Analysis of Biological Data in R https://tess.elixir-europe.org/events/statistical-analysis-of-biological-data-in-r-941b3b2c-0376-4c17-a7ff-3091c110da9e This course provides a refresher on the foundations of statistical analysis. [] bioinformatics-core@sheffield.ac.uk [] [] workshops_and_courses [] []