Workflows
Scientific topics: Protein folds and structural domains or Protein structure analysis or Regulatory RNA or Systems biology or Transcriptomics
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Building-interoperable-and-reusable-systems-biology-models
A learning path for systems biology biocurators which will support the creation and curation of interoperable and reusable models for precise hypotheses and predictions.
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Homology Modelling with SWISS-MODEL
This is the workflow of homology modelling with the SWISS-MODEL expert system
SWISS-MODEL is a web-based integrated service dedicated to protein structure homology modelling. It guides the user in building protein homology models at [different levels of...
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READemption
READemption is a pipeline for the computational evaluation of RNA-Seq data. It was originally developed to process dRNA-Seq reads (as introduced by Sharma et al., Nature, 2010 (Pubmed)) originating from bacterial samples. Meanwhile is has been extended to process data generated in different...
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RNA-seq summarization with annotated genome
Basic workflow for RNA-seq analysis to get to a count table.
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TRUFA RNAseq
TRUFA (Transcriptomes User-Friendly Analysis) is a free webserver designed to help you perform RNA-seq analysis.
So far, TRUFA is allowing you to execute the following steps (programs used are specified in the parentheses):
Reads cleaning:
Reads quality control (FASTQC)
Quality trimming...