Search results
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e-learning
Investigating antimicrobial resistance with EMBL-EBI resources: A practical introduction
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Phylogenetic analysis of pathogens: Staphylococcus aureus, host switching and antibiotic resistance
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hands-on tutorial
Hands-on for 'Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition' tutorial
• beginnerMetagenomics metagenomics Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
Recorded webinar
The Pathogens Portal: A gateway to vast biomolecular data for pathogen research
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e-learning
Phylogenetics of animal pathogens: basic principles and applications
• beginnerPhylogenetics Veterinary medicine Animal pathogens -
ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens E learning Phylogenetics -
Plant and Pathogen Bioinformatics
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Maturity Model for Pathogen Data Platforms
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GTN Smörgåsbord 3: OneHealth - Building a pathogen surveillance system with Galaxy - An automated SARS-CoV-2 genome surveillance system built around Galaxy
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BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast E learning Multiple sequence alignment -
Course materials
Bioinformatics approaches to viruses
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Infectious Disease Genomic Epidemiology 2018 Module 2-Pathogen Genomic Analysis 1
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Infectious Disease Genomic Epidemiology 2018 Module 3-Pathogen Genomic Analysis 2
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Infectious Disease Genomic Epidemiology 2017 Module 2-Pathogen Genomic Analysis 1
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Infectious Disease Genomic Epidemiology 2017 Module 3-Pathogen Genomic Analysis 2
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WORKSHOP: Fungal Genomics with Galaxy
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Infectious Disease Genomic Epidemiology 2018 Module 6-Emerging Pathogen Detection and Identification Using Metagenomics Samples
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Infectious Disease Genomic Epidemiology 2017 Module 6-Emerging Pathogen Detection and Identificatin Using Metagenomic Samples
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Recorded webinar
Inferring cell-cell communication through spatial transcriptomics data
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e-learning
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19 -
e-learning
Identifying tuberculosis transmission links: from SNPs to transmission clusters
•• intermediateEvolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote -
e-learning
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote … -
FREE online course
A Practical Guide for SARS-CoV-2 Whole Genome Sequencing Join now
• beginnerSequencing Best Practices quality control Genomics Metagenomics Genomic data library preparation sars-cov-2 covid-19 surveillance -
Recorded webinar
Data-driven modelling of intercellular interactions in the tumour microenvironment
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Recorded webinar
Mathematical modelling as knowledge mapping in PhysiCell: a guided tour
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Recorded webinar
The future of preprint peer review
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H3ABioNet
H3ABioNet is a Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) consortium.
H3ABioNet was established to develop bioinformatics capacity in Africa and specifically to enable genomics data analysis by H3Africa researchers across the continent. H3ABioNet...1 event (20 past events)H3ABioNet https://h3abionet.org https://tess.elixir-europe.org/content_providers/h3abionet H3ABioNet is a Pan African Bioinformatics Network for the Human Heredity and Health in Africa (H3Africa) consortium. H3ABioNet was established to develop bioinformatics capacity in Africa and specifically to enable genomics data analysis by H3Africa researchers across the continent. H3ABioNet is developing human capacity through training and support for data analysis, and facilitating access to informatics infrastructure by developing or providing access to pipelines and tools for human, microbiome and pathogen genomic data analysis. /system/content_providers/images/000/000/803/original/LOGO-HEADER-2.png?1726047187 -
COG-Train
COG-Train is an international educational initiative providing open-access learning in SARS-CoV-2 genomics. It aims to facilitate an increase in global genome sequencing and analysis capacity, reduce sequencing inequality and enhance pathogen surveillance.
The programme’s training courses and...
4 training materialsCOG-Train https://www.cogconsortium.uk/priority-areas/training/ https://tess.elixir-europe.org/content_providers/cog-train COG-Train is an international educational initiative providing open-access learning in SARS-CoV-2 genomics. It aims to facilitate an increase in global genome sequencing and analysis capacity, reduce sequencing inequality and enhance pathogen surveillance. The programme’s training courses and development are built around our core concept of partnering with international researchers, public health experts and surveillance networks and providing open-access FREE training for all. COG-Train is funded by Wellcome Trust and the Foreign, Commonwealth & Development Office and led jointly by COVID-19 Genomics UK (COG-UK) consortium and Wellcome Connecting Science (WCS). Whole Viral Genome sequencing is an essential tool to identify and track the emergence and spread of SARS-CoV-2 variants as the COVID-19 pandemic progresses. Sequence data informs public health interventions and the further development of diagnostics, therapeutics and vaccines. There is inequity of access to pathogen sequencing worldwide, and COG-Train is committed to contributing towards efforts that close this gap. By building global partnerships with sequencing networks and scientists around the world, we hope to build a truly inclusive training programme that shares the many challenges faced in sequencing efforts, as well as highlighting the numerous success stories, and facilitating knowledge sharing. Outputs include a series of massive online, open-access courses on all aspects of SARS-CoV-2 sequencing based on WCS’s successful use of the FutureLearn platform, as well as week-long intensive virtual training courses, short expert workshops and concurrent distributed Classrooms, the latter of which utilises blended training. The distributed classroom model will be used to increase reach and impact of the learning materials, with training being delivered simultaneously in multiple classrooms across many countries. The training programme includes train-the-trainer components to help further build capacity in-country, rather than rely on a one-hit train and leave model. The COG-Train educational programme builds on the COG-UK values of data sharing, open collaboration, value for money, inclusivity and the prioritisation of public health impact. /system/content_providers/images/000/000/644/original/COG-Train_Logo.png?1657104279