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Showing 30 materials
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Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data … -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology Medical informatics FAIR data Data management Computer science Data editing Ontology visualisation Visualisation Data handling Clinical data … -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data … -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval … -
Video, Training materials, E-learning, Mock data
Advanced SPARQL queries and best practices
••• advancedComputer science Data management FAIR data Medical informatics Clinical data SPARQL Query data RDF Knowledge graph Inference … -
Video
Querying versioned terminologies - How to improve the accuracy of data analysis?
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Query data Versioning of Terminology Clinical ATC … -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework … -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data … -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology … -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF … -
Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR … -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design … -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF … -
E-learning + workshop
Data Sharing in Clinical Research
FAIR data -
Recorded webinar
Finding and using publicly available data Q&A session
Data curation and archival Database management Data security
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e-learning
Data management in Medicinal Chemistry
• beginnerComputational chemistry FAIR Data, Workflows, and Research computational-chemistry data-management fair medicinal-chemistry -
e-learning
Clinical Metaproteomics 2: Discovery
• beginnerProteomics label-TMT11 -
e-learning
Bringing data to life: Data management for the biomolecular sciences
Data management Data quality management Ontology and terminology Metadata Data standards FAIR Literature Preprints Biocurators Open access
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Mantra Research Data Management Training
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e-learning
Functional genomics III: Submitting your data and functional genomics databases
Functional genomics Data curation and archival Data management Metadata Functional genomics resources Data submission Microarray Next-generation sequencing NGS
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e-learning
Biocuration: A curated set of EMBL-EBI online courses
Data curation and archival Database management Natural language processing Ontology and terminology Programmatic access Programming Text mining Biocuration Biocurators User experience …
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e-learning
Beyond the numbers: The human side of data
Database management Biobank Ethics ELSI
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e-learning
BioSamples: Quick tour
Data curation and archival Data management Metadata Reference samples Biological samples
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e-learning
Data-driven plant sciences: A curated collection of EMBL-EBI on-demand training
Plant biology Machine learning Data architecture, analysis and design Database management Genotype and phenotype Data standards Spatial transcriptomics
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e-learning
Using publicly available data: An introduction
Publicly available data Open data Licences Programmatic access Data management
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e-learning
Exploring environmental DNA: Metabarcoding workflow and open data resources for eDNA research
Biodiversity Environmental sciences Metabarcoding Metagenomics Microbial ecology Data management Sequencing eDNA Environmental DNA
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e-learning
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons
••• advancedGenetic variation Variant Analysis -
e-learning
Bioinformatics for principal investigators: A curated collection of EMBL-EBI on-demand training
Principal investigators Data management Competencies Bioinformatics Bioinformaticians
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Course materials, Training materials
"Ready for BioData Management?" Training Data Stewards for Life Sciences
Data management Data Steward research data management FAIR FAIR Research Training (Training) Open science Open data RDM
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Recorded webinar
The PerMedCoE competency framework to guide training and career development
Computational biology Personalised medicine
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