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Showing 30 materials
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Working Remotely
Extras
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Working Remotely
Shell
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hands-on tutorial
Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• beginnerData management Imaging REMBI -
Video
RDMbites | Bioimage metadata – REMBI
REMBI metadata
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e-learning
Exporting to Onedata remote
• beginnerUsing Galaxy and Managing your Data storage -
Video
RDMbites | Bioimage metadata – REMBI: image correlation
REMBI metadata
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Video
RDMbites | Bioimage metadata – REMBI: study component
metadata REMBI
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Video
RDMbites | Bioimage metadata – REMBI: study
REMBI metadata
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Video
RDMbite | Bioimage metadata – REMBI: specimen
REMBI Image Data metadata
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Video
RDMbites | Bioimage metadata – REMBI: biosample
REMBI biosample metadata
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e-learning
Remove contamination and host reads
• beginnerMetagenomics Microbial ecology Microbiome -
Video
RDMbites | Bioimage metadata – REMBI: analysed data
REMBI metadata bioimage
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Video
RDMbites | Bioimage metadata – REMBI: image data
REMBI Image Data data collection
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Video
RDMbites | Bioimage metadata - REMBI: image acquisition
Image REMBI metadata
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ngs-docs/2021-august-remote-computing
High performance computing
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slides
Running Jobs on Remote Resources with Pulsar
• beginnerGalaxy Server administration jobs -
e-learning
Running Jobs on Remote Resources with Pulsar
• beginnerGalaxy Server administration ansible git-gat jobs -
e-learning
Removing the effects of the cell cycle
• beginnerSingle Cell -
e-learning
Sentinel 2 biodiversity
• beginnerEcology Remote sensing biodiversity -
e-learning
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19 -
Removal of human reads from SARS-CoV-2 sequencing data
Removal human reads SARS-CoV-2 sequencing data
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e-learning
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• beginnerImaging Bioimaging Data management FAIR Data, Workflows, and Research Metadata -
slides
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
• beginnerSequence assembly Assembly covid19 -
e-learning
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly biodiversity covid19 -
Open educational resource, Training materials
I3D:bio's OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training
• beginnerOMERO Research Data Management REMBI Microscopy data Metadata I3D:bio RDM4mic data organisation -
Video, Webinar
PHENET webinar (22 Nov 24): Introduction, Tools & Methods
natural and agricultural ecosystems remote sensing agricultural management first dynamics plant phenotyping -
Video, Webinar
PHENET webinar (22 Nov 24): Farms 2 Platforms
natural and agricultural ecosystems remote sensing agricultural management first dynamics plant phenotyping -
Video, Webinar
PHENET webinar (22 Nov 24): Use Case of Doller Valley
natural and agricultural ecosystems remote sensing agricultural management first dynamics plant phenotyping -
Video, Webinar
PHENET webinar (22 Nov 24): Earth observation services and proxy-detection for research infrastructures
natural and agricultural ecosystems remote sensing agricultural management first dynamics plant phenotyping -
slides
Contributing with GitHub via command-line
• beginnerContributing to the Galaxy Training Material
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