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Showing 26 materials
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e-learning
Creating content in Markdown
• beginnerContributing to the Galaxy Training Material -
rstudio/rmarkdown-cookbook
R markdown R Rmarkdown
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lessons
Laboratory documentation with Markdown
• beginnerLaboratory information management Markdown Jupyter Notebook Data Management -
hbctraining/reproducibility-tools
R markdown Reproducibility R Rmarkdown Version control
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hbctraining/Tools-for-reproducible-research
R markdown Reproducibility R Rmarkdown Version control
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carpentries-incubator/reproducible-publications-quarto
R markdown Reproducibility R Rmarkdown Version control
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rstudio/bookdown
R markdown R Rmarkdown
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datacarpentry/rr-literate-programming
R markdown R Rmarkdown
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jthomasmock/rmd-nhs
R markdown R Rmarkdown
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rstudio/rmarkdown-book
R markdown R Rmarkdown
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fhdsl/Tools_for_Reproducible_Workflows_in_R
R markdown R Rmarkdown Version control
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lessons, e-learning
Introduction to Data Management Practices - Introduction to RStudio
• beginnerData management FAIR data RStudio CONVERGE README -
rstudio/learnr
R script R
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jennybc/happy-git-with-r
R script R Version control
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Training materials
NBIS Reproducible research course
data management Reproducibility Data analysis
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melbournebioinformatics/MelBioInf_docs
Data management Genomics RNA-Seq Transcriptomics General Unix/Linux Version control RNA-seq
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Video, Slides, Webinar
DSW Template Development Kit: The Tutorial
•• intermediateData management data stewardship data management plan FAIR data management software tools DMP templates template development -
Training materials
Beginners introduction to Git and GitHub
• beginnerGit GitHub control version Reproducibility -
video
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
data management RDM
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Tutorial
Contributing to the Galaxy Training Material - Creating a new tutorial - Writing content in Markdown
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e-learning
Contributing with GitHub via command-line
• beginnerContributing to the Galaxy Training Material -
hbctraining/Training-modules
FAIR data Data visualisation R markdown Enrichment analysis RNA-Seq Transcriptomics Variant pattern analysis General Data visualization Python …
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stephenturner/workshops
Data visualisation R markdown Genomics RNA-Seq Statistics and probability General Data visualization R Rmarkdown RNA-seq …
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Make your research FAIRer with Quarto, GitHub and Zenodo
• beginnerFAIR data management reproducible research -
WORKSHOP: RNA-Seq: reads to differential genes and pathways
Bioinformatics Analysis Transcriptomics RNA-seq Workflows Nextflow nf-co.re
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WORKSHOP: Making sense of gene and protein lists with functional enrichment analysis
Bioinformatics http://edamontology.org/topic_0091 Analysis http://edamontology.org/operation_2945 Enrichment analysis http://edamontology.org/operation_3501