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hands-on tutorial
Creating content in Markdown
• beginnerContributing to the Galaxy Training Material -
rstudio/rmarkdown-cookbook
R markdown R Rmarkdown
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carpentries-incubator/reproducible-publications-quarto
R markdown R Version control Rmarkdown Reproducibility
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hbctraining/reproducibility-tools
R markdown Reproducibility Version control R Rmarkdown
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jthomasmock/rmd-nhs
R markdown R Rmarkdown
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rstudio/bookdown
R markdown R Rmarkdown
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rstudio/rmarkdown-book
R markdown R Rmarkdown
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datacarpentry/rr-literate-programming
R markdown R Rmarkdown
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rstudio/learnr
R script R
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lessons, e-learning
Introduction to Data Management Practices - Introduction to RStudio
• beginnerData management FAIR data RStudio CONVERGE README -
jennybc/happy-git-with-r
R script R Version control
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melbournebioinformatics/MelBioInf_docs
Data management Transcriptomics RNA-Seq Genomics General Unix/Linux RNA-seq Version control
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Training materials
NBIS Reproducible research course
data management Reproducibility Data analysis
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Tutorial
Contributing to the Galaxy Training Material - Creating a new tutorial - Writing content in Markdown
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Training materials
Beginners introduction to Git and GitHub
• beginnerGit GitHub control version Reproducibility -
Video, Slides, Webinar
DSW Template Development Kit: The Tutorial
•• intermediateData management data stewardship data management plan FAIR data management software tools DMP templates template development -
video
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
data management RDM
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hbctraining/Training-modules
R markdown Enrichment analysis FAIR data Data visualisation Variant pattern analysis RNA-Seq Transcriptomics General Python R Rmarkdown Unix/Linux Version control Data visualization Variant analysis RNA-seq
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Make your research FAIRer with Quarto, GitHub and Zenodo
• beginnerFAIR data management reproducible research -
WORKSHOP: RNA-Seq: reads to differential genes and pathways
Bioinformatics Analysis Transcriptomics RNA-seq Workflows Nextflow nf-co.re