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Openscapes/quarto-website-tutorial
R script Quarto R
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hamelsmu/posit-python-quarto
Python script Python Quarto
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UCSB-MEDS/customizing-quarto-websites
Quarto
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posit-conf-2023/quarto-r
R script Quarto R
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carpentries-incubator/reproducible-publications-quarto
R markdown Reproducibility R Rmarkdown Version control
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UCSB-MEDS/creating-quarto-websites
R script Reproducibility Quarto R
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posit-conf-2024/quarto-dashboards
R script Quarto R
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posit-conf-2024/quarto-websites
R script Quarto R
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rstudio-conf-2022/get-started-quarto
R script Quarto R
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ivelasq/2024-01-23_getting-started-with-report-writing-using-quarto
R script Quarto R
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sib-swiss/reproducible-analysis-training
R script Reproducibility Quarto R Version control
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Make your research FAIRer with Quarto, GitHub and Zenodo
• beginnerFAIR data management reproducible research -
hadley/r4ds
R script Quarto R Data science
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julien-roux/SIB_days_2024_workshop_EDI
RNA-Seq Transcriptomics Reproducibility Quarto RNA-seq
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julien-roux/SIB_course_2025_best_practices_differences_biological_sex
RNA-Seq Transcriptomics Reproducibility Quarto R RNA-seq
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lessons
R basics
• beginnerInformatics Computer science R RStudio ggplot2 Rmarkdown Quarto dplyr data visualisation -
WORKSHOP: RNA-Seq: reads to differential genes and pathways
Bioinformatics Analysis Transcriptomics RNA-seq Workflows Nextflow nf-co.re
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e-learning
dplyr & tidyverse for data processing
••• advancedSoftware engineering Foundations of Data Science R jupyter-notebook rmarkdown-notebook -
e-learning
SQL with R
•• intermediateSoftware engineering Foundations of Data Science R SQL jupyter-notebook rmarkdown-notebook -
e-learning
Single Cell Publication - Data Plotting
••• advancedContributing to the Galaxy Training Material R jupyter-notebook rmarkdown-notebook -
e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook