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Tutorial
User Interface and Features - Jupyter: Use Jupyter notebooks in Galaxy
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e-learning
JupyterLab in Galaxy
• beginnerUsing Galaxy and Managing your Data interactive-tools -
e-learning
Use Jupyter notebooks in Galaxy
• beginnerUsing Galaxy and Managing your Data -
e-learning
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab
• beginnerClimate interactive-tools -
hands-on tutorial
Hands-on for 'Trajectory Analysis using Python (Jupyter Notebook) in Galaxy' tutorial
Transcriptomics transcriptomics, single-cell, 10x, paper-replication, interactive-tools
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e-learning
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy
• beginnerStatistics and probability Statistics and machine learning deep-learning image-segmentation interactive-tools jupyter-lab machine-learning protein-3D-structure -
e-learning
Ensembl: REST API
Genetics Genome sequencing Sequence alignments API Programmatic access Python R
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Jupyter notebook
BioExcel Building Blocks (BioBB) Training Material
• beginnermolecular dynamics Docking Modeling life sciences -
Jupyter notebooks
Gentle hands-on introduction to Python programming
• beginnerSoftware engineering Python programming -
video
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
data management RDM
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Tutorial
Constraint-based reconstruction and analysis toolbox tutorials
Biomodelling
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e-learning
Sentinel 5P data visualisation
• beginnerClimate earth-system satellite data volcano -
Jupyter notebook, PDF
Introductory image processing on biological images using python.
• beginner -
jakevdp/PythonDataScienceHandbook
Python script Python Data science
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jakevdp/WhirlwindTourOfPython
Python script Python
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e-learning
Advanced Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
jadianes/spark-r-notebooks
R script R Data science
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shawnrhoads/gu-psyc-347
Machine learning Python Data science
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phlippe/uvadlc_notebooks
Machine learning
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Training materials
NBIS Reproducible research course
data management Reproducibility Data analysis
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sbwiecko/intuitive_biostatistics
Statistics and probability Python R Statistics
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Naviden/ML-intro-with-Python
Machine learning Python
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e-learning
Galaxy Interactive Tools
• beginnerGalaxy Server administration ansible interactive-tools -
lessons
Laboratory documentation with Markdown
• beginnerLaboratory information management Markdown Jupyter Notebook Data Management -
e-learning
Scripting Galaxy using the API and BioBlend
• beginnerSoftware engineering Development in Galaxy jupyter-notebook -
Tutorial
Tutorials on COBREXA
•• intermediatePersonalised medicine Simulation experiment Modelling and simulation cell-level simulations Biomodelling HPC -
e-learning
Introduction to Python
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Pangeo Notebook in Galaxy - Introduction to Xarray
• beginnerClimate interactive-tools jupyter-notebook pangeo -
e-learning
Plotting in Python
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Type annotations
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook