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carpentries-incubator/gitlab-novice
Version control
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video
RDMbites | Making code available in a repository
data management RDM
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Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Data handling Standardisation and normalisation Clinical data Data semantics FAIR … -
Video, Training materials, E-learning, Mock data
Advanced SPARQL queries and best practices
••• advancedComputer science Data management FAIR data Medical informatics Clinical data SPARQL Query data RDF Knowledge graph Inference … -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology … -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design … -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval … -
Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data … -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework … -
Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology Medical informatics FAIR data Data management Computer science Data editing Ontology visualisation Visualisation Data handling Clinical data … -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF … -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF … -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data … -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data … -
Version Control with Git
• beginnerprogramming,reproducibility,data management programming,reproducibility,data management,training
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Glittr.org
Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab.
684 training materialsGlittr.org https://glittr.org https://tess.elixir-europe.org/content_providers/glittr-org Glittr (https://glittr.org) is a web application that helps you find and compare bioinformatics training materials on GitHub and GitLab. /system/content_providers/images/000/000/692/original/logo-with-domain.png?1698843802 -
NGS Registry
GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.
60 training materialsNGS Registry https://microasp.upsc.se/ngs_trainers/Materials/wikis/home https://tess.elixir-europe.org/content_providers/ngs-registry GitLab repository and its Wiki companion containing a collection of training materials for teaching next generation sequencing data analysis.