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e-learning
Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
• beginnerClimate interactive-tools -
e-learning
Phylodiversity analysis quick tutorial
• beginnerEcology ecology taxonomic data -
e-learning
Audio data annotation with NEAL (Nature + Energy Audio labeler)
• beginnerEcology biodiversity ecology media annotation sound -
e-learning
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2
• beginnerMetagenomics Microbial ecology Microbiome ecology fungi -
e-learning
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities
• beginnerEcology Biodiversity Data Paper EML FAIR Metadata -
e-learning
Compute and analyze biodiversity metrics with PAMPA toolsuite
• beginnerEcology Community composition EBV class EBV dataset EBV workflow Species population EBV class biodiversity modeling -
e-learning
Visualization of Climate Data using NetCDF xarray Map Plotting
• beginnerEcology pangeo -
e-learning
Visualize EBV cube data with Panoply netCDF viewer
• beginnerEcology Data visualization EBV cube interactive-tools -
e-learning
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
• beginnerEcology Data Paper EML FAIR Metadata biodiversity -
e-learning
Life Traits Ecoregionalization workflow
• beginnerEcology biodiversity -
e-learning
QGIS Web Feature Services
• beginnerEcology GIS Geographical Information System Maps OGC Spatial data WFS biodiversity earth-system -
e-learning
Taxonomic Analysis of eDNA
• beginnerEcology biodiversity -
e-learning
Ecoregionalization workflow tutorial
• beginnerEcology EBV workflow biodiversity earth-system ecology gbif interactive-tools modeling ocean taxonomic data -
e-learning
Cleaning GBIF data for the use in Ecology
• beginnerEcology biodiversity data cleaning data management gbif -
e-learning
Obis marine indicators
• beginnerEcology Biodiversity Data mining biodiversity earth-system marine omics ocean -
e-learning
From NDVI data with OpenEO to time series visualisation with Holoviews
• beginnerEcology NDVI copernicus earth-system holoviews land degradation -
e-learning
Regional GAM
• beginnerEcology EBV dataset EBV workflow Species populations EBV class Species traits EBV class biodiversity -
e-learning
Data submission using ENA upload Tool
• beginnerEcology -
e-learning
Cleaning GBIF data using OpenRefine
• beginnerEcology biodiversity -
slides
Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
• beginnerClimate climate ecology -
e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Sentinel 2 biodiversity
• beginnerEcology Remote sensing biodiversity -
e-learning
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Biodiversity data exploration
• beginnerEcology biodiversity data quality taxonomic data -
e-learning
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Champs blocs indicators
• beginnerEcology EBV dataset EBV workflow Ecosystem EBV class Marine ecosystems biodiversity -
e-learning
Species distribution modeling
• beginnerEcology biodiversity gbif interactive-tools modeling species populations EBV class -
e-learning
Marine Omics identifying biosynthetic gene clusters
• beginnerEcology biodiversity earth-system marine omics ocean -
e-learning
RAD-Seq to construct genetic maps
• beginnerEcology EBV dataset EBV workflowz Genetic composition EBV class RAD-seq biodiversity -
e-learning
RAD-Seq de-novo data analysis
• beginnerEcology EBV dataset EBV workflow Genetic composition EBV class RAD-seq Species populations EBV class biodiversity
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