Training materials
Target audience: Academia/ Research Institution or Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities or Bachelor students or Biologists, Genomicists, Computer Scientists or bioinformaticians or biology and bioinformatics sophomore undergraduates or postgrad
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Tutorial, Training materials, Bioinformatics
How to use REPET software for de novo annotation of transposable elements in genomes
• beginnerGenomics Structural variation Bioinformatics Genome annotation Sequence classification Transposons Annotation Pipelines Docker -
Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
Tutorial
Tutorial on developing Building Blocks
•• intermediateBioinformatics Workflows Personalised medicine HPC building blocks -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
Slides
FAIR data - Module 4 (share and publish data)
• beginnerBioinformatics Biology Data management data sharing Data publishing legal framework data warehouse licensing data reuse -
Slides
FAIR data - Module 3 (Metadata)
• beginnerBioinformatics Biology Data management Data handling metadata data annotation life science standards data sharing -
Slides
FAIR data - Module 2 (data life cycle)
• beginnerData management Biology Bioinformatics Data handling Data preserving Data storage -
Slides
FAIR data - Module 1 (research data)
• beginnermetadata Data Life Cycle Reproducibility Data management plan