Training materials
Status: Active
and Target audience: Academia/ Research Institution or Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities or Bachelor students or bioinformaticians or postgrad or research software engineers and researchers writing code
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Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
podcast, slides
Byte-sized RSE Session 4: Continuous Integration
•• intermediateRSE Research software continuous integration coding skills -
podcast, slides
RSE Byte-sized RSE Session 2: Collaboration and Code Review via GitHub
•• intermediateRSE Research software code review -
podcast, slides
RSE Byte-sized RSE Session 1: Software Licensing
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slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
Presentation, course materials
Introduction to Nextflow workshop
• beginnerWorkflows Nextflow DSL2