Training materials
Scientific topics: Genetic variation or Genome annotation or Genomics or Mass spectrometry or Programming languages or Structure analysis or Structure prediction
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hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Introduction to sequencing with Python (part three)
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Introduction to sequencing with Python (part two)
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Introduction to sequencing with Python (part one)
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Data manipulation with Pandas
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Data Manipulation Olympics - SQL
• beginnerSoftware engineering Foundations of Data Science cyoa jupyter-notebook sql -
hands-on tutorial
Introduction to sequencing with Python (part four)
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Data Manipulation Olympics - JQ
• beginnerSoftware engineering Foundations of Data Science cyoa json -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health