Training materials
Scientific topics: Evolutionary biology or Genetic variation or Inferential statistics or Molecular interactions, pathways and networks or Phenomics or Protein modifications or Public health and epidemiology or Structure prediction
-
hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
hands-on tutorial
Phylogenetics - Back to basics
•• intermediateEvolutionary biology Evolution evolution phylogenetics -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial Resistance Microbiome amr assembly microgalaxy nanopore plasmids -
slides
Phylogenetics - Back to Basics - Estimating trees from alignments
• beginnerEvolutionary biology Evolution -
slides
Phylogenetics - Back to Basics - Phylogenetic Networks
• beginnerEvolutionary biology Evolution -
slides
Phylogenetics - Back to Basics - Introduction
• beginnerEvolutionary biology Evolution -
slides
Phylogenetics - Back to Basics - Multiple Sequence Alignment
• beginnerEvolutionary biology Evolution -
slides
Phylogenetics - Back to Basics - Building Trees
• beginnerEvolutionary biology Evolution -
slides
Phylogenetics - Back to Basics - Terminology
• beginnerEvolutionary biology Evolution