Training materials
Scientific topics: Evolutionary biology or Experimental design and studies or Microbiology or Molecular biology or Oncology or R script or RNA-Seq or Toxicology
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julien-roux/SIB_days_2024_workshop_EDI
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griffithlab/rnabio.org
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hands-on tutorial
Phylogenetics - Back to basics
•• intermediateEvolutionary biology Evolution evolution phylogenetics -
hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
hands-on tutorial
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial Resistance Microbiome amr assembly microgalaxy nanopore plasmids -
slides
Phylogenetics - Back to Basics - Building Trees
• beginnerEvolutionary biology Evolution -
slides
Phylogenetics - Back to Basics - Terminology
• beginnerEvolutionary biology Evolution -
slides
Phylogenetics - Back to Basics - Estimating trees from alignments
• beginnerEvolutionary biology Evolution