Training materials
Scientific topics: Data submission, annotation, and curation or Drug discovery or Experimental design and studies or Genome annotation or Transcriptomics
and Target audience: Life Scientists or Students
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Slides
Life Sciences Research Data Management 2024 Course by ELIXIR Norway
• beginnerData management Data submission, annotation, and curation Data handling Deposition Data retrieval -
hands-on tutorial
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• beginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Genome-wide alternative splicing analysis
••• advancedTranscriptomics alternative splicing isoform switching -
hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
slides
Identification of non-canonical ORFs and their potential biological function
• beginnerTranscriptomics -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics