Training materials
Scientific topics: Data management or Functional genomics or Gene and protein families or Metagenomics or Protein modifications or Sequence assembly
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FAIR-by-Design-Methodology/FAIR-by-Design_Book
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hds-sandbox/RDM_biodata_course
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hands-on tutorial
Decontamination of a genome assembly
• beginnerSequence assembly Assembly -
hands-on tutorial
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Assembly -
e-learning
Exploring microbial ecosystems: A curated collection of EMBL-EBI on-demand training
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hands-on tutorial
Calculating α and β diversity from microbiome taxonomic data
• beginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
Slides
Life Sciences Research Data Management 2024 Course by ELIXIR Norway
• beginnerData management Data curation and archival Data handling Data deposition Data retrieval Data management planning -
hands-on tutorial
Identification of the micro-organisms in a beer using Nanopore sequencing
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
hands-on tutorial
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis Pathogens detection Phylogenetic tree cyoa microgalaxy -
hands-on tutorial
Taxonomic Profiling and Visualization of Metagenomic Data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling