Training materials
Scientific topics: Computer science or Data visualisation or Electron microscopy or Medical informatics or Pathway or network or Sample collections or Viral genomics
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hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
lessons
R basics
• beginnerInformatics Computer science R RStudio ggplot2 Rmarkdown Quarto dplyr data visualisation -
lcolladotor/cshl_rstats_genome_scale_2024
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RohanAlexander/telling_stories
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uwdata/visualization-curriculum
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PAIR-code/understanding-umap
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bioinformaticsdotca/IDE_2024
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alliblk/genepi-book