Training materials
Scientific topics: Cheminformatics or Data mining or Experimental design and studies or MicroRNA sequencing or Microbiology or Proteomics experiment or Transcriptomics
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genome/bfx-workshop
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julien-roux/SIB_days_2024_workshop_EDI
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griffithlab/rnabio.org
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hands-on tutorial
Pathway analysis with the MINERVA Platform
•• intermediateTranscriptomics bulk cyoa rna-seq viz -
hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
hands-on tutorial
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial Resistance Microbiome amr assembly microgalaxy nanopore plasmids -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
slides
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics