Training materials
Scientific topics: CWL or Computer science or Drug discovery or Exomes or Genetic variation or Genotype and phenotype or Mass spectrometry or Metagenomic sequencing
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genome/bfx-workshop
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hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
hands-on tutorial
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial Resistance Microbiome amr assembly microgalaxy nanopore plasmids -
slides
Introduction to Variant analysis
• beginnerGenetic variation Variant Analysis -
lessons
R basics
• beginnerInformatics Computer science R RStudio ggplot2 Rmarkdown Quarto dplyr data visualisation -
lcolladotor/cshl_rstats_genome_scale_2024
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bioinformaticsdotca/IDE_2024
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alliblk/genepi-book