Training materials
Scientific topics: Biology or Cheminformatics or Expression analysis or Genome assembly or Metagenomics or Toxicology
76 materials found
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e-learning
Exploring microbial ecosystems: A curated collection of EMBL-EBI on-demand training
Microbial ecology Microbiology Metagenomics Biodiversity Statistics and probability Open access microbiome microbial ecosystems
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ebp-nor/genome-assembly-workshop-2023
Genome assembly Sequencing Next generation sequencing Long read sequencing
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hands-on tutorial
Calculating α and β diversity from microbiome taxonomic data
• beginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
AOPLink: Extracting and Analyzing Data Related to an AOP of Interest
Toxicology adverse outcome pathway AOP-Wiki RDF AOP-Wiki
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hands-on tutorial
Identification of the micro-organisms in a beer using Nanopore sequencing
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
hands-on tutorial
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis Pathogens detection Phylogenetic tree cyoa microgalaxy -
hands-on tutorial
Taxonomic Profiling and Visualization of Metagenomic Data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
genome/bfx-workshop
Workflows Data visualisation ChIP-seq Epigenetics Genomics Metagenomics Sequencing RNA-Seq Variant pattern analysis Docker Data visualization Python R Unix/Linux ATAC-seq Next generation sequencing RNA-seq Single-cell sequencing Variant analysis Long read sequencing
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hands-on tutorial
16S Microbial Analysis with mothur (extended)
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy -
hands-on tutorial
Building an amplicon sequence variant (ASV) table from 16S data using DADA2
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis 16S Microbiome metabarcoding microgalaxy