Training materials
Scientific topics: Agricultural science or Bioimaging or Data governance or Gene expression and microarray or Genome annotation or Metabolomics or Virology
and Target audience: PhD students or Students
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hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
slides
Introduction to Metabolomics
• beginnerMetabolomics -
slides
Mass spectrometry: LC-MS preprocessing - advanced
• beginnerMetabolomics -
e-learning
Methods and resources for omics studies: A curated collection of EMBL-EBI on-demand training
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e-learning
Molecular building blocks of life: A curated collection of EMBL-EBI on-demand training
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course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
hands-on tutorial
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
•• intermediateMetabolomics -
e-learning
Ensembl: Filmed Perl API Workshop