Training materials
Resource type: hands-on tutorial
and Scientific topics: Computational chemistry or Knowledge representation or Medical informatics or Microbiology or Pathway or network or Sample collections or Structural biology
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hands-on tutorial
Checking expected species and contamination in bacterial isolate
• beginnerEcology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
hands-on tutorial
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial Resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
hands-on tutorial
Bacterial Genome Annotation
• beginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod illumina jbrowse1 microgalaxy -
hands-on tutorial
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial Resistance Microbiome amr assembly microgalaxy nanopore plasmids -
hands-on tutorial
Data management in Medicinal Chemistry
• beginnerComputational chemistry FAIR Data, Workflows, and Research computational-chemistry data-management fair medicinal-chemistry -
hands-on tutorial
AlphaFold and friends on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction AlphaFold Database (13181) -
hands-on tutorial
A tour of Machine Learning
•• intermediateMachine learning Classification Deep Learning Machine Learning -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
hands-on tutorial
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote tuberculosis -
hands-on tutorial
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy prokaryote