Training materials
Keywords: Git or QC or Shell or interactive-tools or metadata or metagenomics or variant-analysis
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hands-on tutorial
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
hands-on tutorial
Binning of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
hands-on tutorial
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
Tutorial
Introducción a Git y GitHub
• beginnerGit GitHub Version control -
hands-on tutorial
Introduction to Git and Github
• beginnerSoftware engineering Git Github Version control -
lessons, e-learning
Introduction to Data Management Practices - Metadata
• beginnerData management FAIR data data organisation FAIR CONVERGE ontologies metadata Controlled vocabularies -
Tutorial, Video, Series of videos
Federated EGA: Introductory videos
• beginnerFederated EGA FEGA metadata ELIXIR-CONVERGE Phenotype SARS-CoV-2 -
course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
hands-on tutorial
Hands-on for 'Taxonomic Profiling and Visualization of Metagenomic Data' tutorial
• beginnerMetagenomics metagenomics taxonomic profiling -
hands-on tutorial
Hands-on for 'Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition' tutorial
• beginnerMetagenomics metagenomics Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa