Training materials
Resource type: hands-on tutorial
and Keywords: Genomics or Populations or Python biologists or Reproducibility or covid19 or label-free
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hands-on tutorial
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
MaxQuant and MSstats for the analysis of label-free data
•• intermediateProteomics label-free -
hands-on tutorial
Label-free data analysis using MaxQuant
• beginnerProteomics DDA label-free -
hands-on tutorial
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
• beginnerUsing Galaxy and Managing your Data covid19 ncbi -
hands-on tutorial
Automating Galaxy workflows using the command line
• beginnerUsing Galaxy and Managing your Data covid19 variant-analysis workflows -
hands-on tutorial
Removal of human reads from SARS-CoV-2 sequencing data
•• intermediateSequence analysis covid19
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