Training materials
Licence: Creative Commons Attribution 4.0 International
and Keywords: Expression-estimation or Information visualisation or Nextflow or admin or covid19 or dev
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hands-on tutorial
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
WORKSHOP: Translating workflows into Nextflow with Janis
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WORKSHOP: Unlocking nf-core - customising workflows for your research
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WORKSHOP: RNA-Seq: reads to differential genes and pathways
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WEBINAR: Portable, reproducible and scalable bioinformatics workflows using Nextflow and Pawsey Nimbus Cloud
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hands-on tutorial
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Hands-on for 'ToolFactory: Generating Tools From More Complex Scripts' tutorial
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hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
Hands-on for 'Use Singularity containers for running Galaxy jobs' tutorial
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