Training materials
Keywords: DMP or FASTQ or Shell or jupyter-notebook or metadata or transcriptomics
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lessons
Bring Your Own Data Management Plan
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Using ASAP for Single-Cell Analysis
• beginnergenes and genomes biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics bart deplancke group -
lessons, e-learning
Introduction to Data Management Practices - Metadata
• beginnerData management FAIR data data organisation FAIR CONVERGE ontologies metadata Controlled vocabularies -
Tutorial, Video, Series of videos
Federated EGA: Introductory videos
• beginnerFederated EGA FEGA metadata ELIXIR-CONVERGE Phenotype SARS-CoV-2 -
hands-on tutorial
Hands-on for 'RO-Crate in Python' tutorial
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hands-on tutorial
Hands-on for 'Best practices for workflows in GitHub repositories' tutorial
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course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
hands-on tutorial
Hands-on for 'Inferring Trajectories using Monocle3 (R)' tutorial
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Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis
• beginnerfunctional genomics genes and genomes next generation sequencing transcriptomics training -
Gene Expression made Useful Easily: Tools and Database of Bgee
• beginnerBgee genes and genomes evolution and phylogeny services and resources comparative genomics database curation data management data visualisation transcriptomics training marc robinson-rechavi group