Training materials
Scientific topics: Bottom-up proteomics
and Keywords: DDA or DMP tools or General or HPC or Literature search or Shell or proteomics or transcriptomics
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galaxyproject/training-material
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slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
hands-on tutorial
Biomarker candidate identification
• beginnerProteomics DDA human -
hands-on tutorial
Annotating a protein list identified by LC-MS/MS experiments
• beginnerProteomics DDA human -
hands-on tutorial
MaxQuant and MSstats for the analysis of TMT data
• beginnerProteomics DDA TMT -
hands-on tutorial
Label-free versus Labelled - How to Choose Your Quantitation Method
• beginnerProteomics DDA -
hands-on tutorial
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
••• advancedProteomics DDA SILAC -
hands-on tutorial
Peptide and Protein ID using SearchGUI and PeptideShaker
• beginnerProteomics DDA HeLa -
hands-on tutorial
Label-free data analysis using MaxQuant
• beginnerProteomics DDA label-free -
hands-on tutorial
Peptide and Protein ID using OpenMS tools
••• advancedProteomics DDA HeLa
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