Training materials
Keywords: ChIP-seq or R-programming or REDCap or Sequence analysis or Shiny or assembly or ecology or genome-annotation
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hands-on tutorial
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• beginnerSequence analysis covid19 gmod jbrowse1 -
hands-on tutorial
Antibiotic resistance detection
• beginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial Resistance Microbiome amr assembly microgalaxy nanopore plasmids -
hands-on tutorial
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
hands-on tutorial
Clean and manage Sanger sequences from raw files to aligned consensus
• beginnerSequence analysis -
hands-on tutorial
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis -
laderast/shinyowl
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mictes/Shiny_Tutorial
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posit-dev/py-shiny-workshop
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ThinkR-open/engineering-shiny-book
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dputhier/EBA_2015_ChIP-Seq