Training materials
Status: Active
and Keywords: AlphaFold Database (13181) or DMP tools or Extras or High performance computing or RDF or git-gat
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
e-learning
High Performance Computing in Life Sciences
•• intermediateComputational biology High performance computing Data storage -
youtube video, video
ELIXIR resources and Data Management Plans tools: RDMkit and Data Stewardship Wizard
• beginnerData management FAIR data ELIXIR-CONVERGE ELIXIR DMP data management plan research data management FAIR principles DMP tools DMP templates tool template DMP evaluation RDMkit Data Stewardship Wizard DSW -
Karel Berka and Marian Novotný - Alphafoldology - Machine Learning revolution in structural biology
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Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework FAIR Findability Accessibility Interoperability Reusability -
WEBINAR: Where to go when your bioinformatics outgrows your compute
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Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Triplestore Ontology -
Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation Medical informatics FAIR data Data management Computer science Ontology visualisation Visualisation Data retrieval Data handling Query and retrieval Clinical data SPARQL Data visualization RDF Knowledge graph GraphDB Mock data
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