Training materials
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Workflow Run RO-Crate Introduction
• beginnerFAIR Data, Workflows, and Research ro-crate -
lessons
Visualisation with RStudio
• beginnerData visualisation Data Visualization R RStudio ggplot2 -
hands-on tutorial
Exporting Workflow Run RO-Crates from Galaxy
• beginnerFAIR Data, Workflows, and Research ro-crate workflows -
hands-on tutorial
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
hands-on tutorial
Best practices for workflows in GitHub repositories
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
hands-on tutorial
Submitting workflows to LifeMonitor
• beginnerFAIR Data, Workflows, and Research ro-crate -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Peptide and Protein ID using SearchGUI and PeptideShaker
• beginnerProteomics DDA HeLa
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