Training materials
Difficulty level: Intermediate
and Target audience: Beginners or Research Scientists or bioinformaticians or biology and bioinformatics sophomore undergradu... or medical students or policy officer
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
IFB Shiny training
•• intermediateR-programming Reproducible Science -
Training materials
FAIR principles applied to bioinformatics
•• intermediateFAIR Reproducible Science Open science Data analysis Data processing -
e-learning, Video
Webinars and Pills of knowledge Videos on rare vascular diseases (VASCERN)
•• intermediateRare diseases Rare Diseases & Research -
e-learning
Medics4RareDiseases (M4RD) video library
•• intermediateRare diseases Rare Diseases & Research -
course materials
Introduction to Persistent Identifiers
•• intermediateData management system relevant metadata for data PID metadata Python API pyhandle Persistent Identifiers
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