Training materials
Difficulty level: Intermediate
and Keywords: Cloud computing or Metabolomics or Proteomics or Single Cell technologies or biostatistics or covid19 or microbiome
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hands-on tutorial
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
•• intermediateMetabolomics -
Statistics and Machine Learning for Life Sciences
•• intermediatetraining biostatistics data mining machine learning torsten schwede & thierry sengstag group -
Introduction to Bayesian Statistics with R
•• intermediatebiostatistics training -
Applied Statistics: Data Analysis in Practice
•• intermediatebiostatistics data visualisation training mauro delorenzi & frédéric schütz group -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
hands-on tutorial
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• intermediateGenetic variation Variant Analysis covid19 one-health virology -
hands-on tutorial
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
hands-on tutorial
metaQuantome 3: Taxonomy
•• intermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy microgalaxy -
hands-on tutorial
Secretome Prediction
•• intermediateProteomics human work-in-progress -
hands-on tutorial
Proteogenomics 1: Database Creation
•• intermediateProteomics proteogenomics