Training materials
Difficulty level: Intermediate
and Keywords: Anatomy Physiology and Atlases or Annotation or Clinical data or Reproducibility or Statistical-model or transcriptomics
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
Video
RDMbites: Sequencing data
•• intermediatetranscriptomics FASTQ FastQC Sequencing -
hands-on tutorial
Hands-on for 'Visualization of RNA-Seq results with Volcano Plot in R' tutorial
•• intermediatetranscriptomics interactive-tools -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB