Training materials
Difficulty level: Intermediate
and Keywords: sensitive data or Clinical data or Genomics or computer-science or metabolomics or programming
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UNIX Shell Scripting in Life Sciences
•• intermediateprogramming training mark ibberson group -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Best Practices in Programming
•• intermediateprogramming reproducibility bernd rinn group -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Documentation, Exercise, Handout, Scripts
CPANG19 - Computational PANGenomics (2019)
•• intermediateGenomics -
Documentation, Exercise, Handout, Scripts
ADER19F - Analysis of Differential Expression with RNAseq (First course in 2019)
•• intermediateRNA-Seq Genomics RNA -
Documentation, Exercise, Handout, Scripts
ADER18S - Analysis of Differential Expression with RNAseq (Second course in 2018)
•• intermediateRNA-Seq Genomics RNA -
Documentation, Exercise, Handout, Scripts
CPANG18 - Computational PANGenomics (2018)
•• intermediateGenomics -
Documentation, Exercise, Handout, Scripts
ADER18F - Analysis of Differential Expression with RNAseq (First course in 2018)
•• intermediateRNA-Seq Genomics RNA