Training materials
Difficulty level: Intermediate
and Keywords: Data preserving or Automation or Biomedical Literature or HPC or Knowledge graph or Phylogenetics
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Tutorial, Presentation
Materials from 'Introduction to High Performance Computing for Life Scientists' course
•• intermediateComputational biology HPC GPU parallel computing -
Online material, online course
Workshop on Resources for Plant Sciences, 2023
•• intermediatePlant biology service bundle eLearning EeLP plant science Data Visualization Gene Ontology Knowledge graph MIAPPE -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Tutorial
Tutorial on developing Building Blocks
•• intermediateBioinformatics Workflows Personalised medicine HPC building blocks -
Tutorial
Tutorial on working with computing clusters
•• intermediateHPC -
Tutorial
Tutorial on CARNIVAL
•• intermediateMolecular interactions, pathways and networks Gene expression Omics RNA-Seq Network analysis RNA-Seq analysis HPC Signaling RNAseq, transcriptomics -
Tutorial
Tutorials on COBREXA
•• intermediatePersonalised medicine Simulation experiment Modelling and simulation cell-level simulations Biomodelling HPC -
Tutorial
Tutorial on CellNOpt
•• intermediatePersonalised medicine Simulation experiment Molecular interactions, pathways and networks Transcription factors and regulatory sites Modelling and simulation HPC Biomodelling Signalling
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