Training materials
Difficulty level: Beginner
and Scientific topics: Comparative genomics or Gene expression or MS-based untargeted metabolomics or Natural language processing or Phylogenetics or Sequence analysis or Toxicology
-
hands-on tutorial
Clean and manage Sanger sequences from raw files to aligned consensus
• beginnerSequence analysis -
hands-on tutorial
Screening assembled genomes for contamination using NCBI FCS
• beginnerSequence analysis -
slides
Introduction to Metabolomics
• beginnerMetabolomics -
slides
Mass spectrometry: LC-MS preprocessing - advanced
• beginnerMetabolomics -
hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
e-learning
Interpret phylogenetic data to track SARS-CoV-2 evolution
• beginnerVirology Phylogenetics SARS-CoV-2 -
e-learning
Use V-pipe to evaluate SARS-CoV-2 sequence variability
• beginnerVirology Sequence analysis SARS-CoV-2 Variant calling -
hands-on tutorial
NCBI BLAST+ against the MAdLand
• beginnerSequence analysis -
hands-on tutorial
Mass spectrometry : GC-MS analysis with metaMS package
• beginnerMetabolomics -
hands-on tutorial
Mass spectrometry: LC-MS analysis
• beginnerMetabolomics