Training materials
Keywords: Statistics or dev or jupyter-notebook
and Contributors: Helena Rasche or Prof. Rod Page or Prof. Thomas Ferrin or Prof. Tom Freeman or carpentries-incubator
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hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
carpentries-incubator/statistical-thinking-public-health
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carpentries-incubator/machine-learning-novice-python
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carpentries-incubator/high-dimensional-stats-r
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carpentries-incubator/machine-learning-novice-sklearn
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hands-on tutorial
RO-Crate in Python
• beginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
hands-on tutorial
Inferring single cell trajectories with Monocle3 (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Python - Coding Style
•• intermediateSoftware engineering Foundations of Data Science jupyter-notebook -
hands-on tutorial
Inferring single cell trajectories with Scanpy (Python)
• beginnerTranscriptomics 10x Python Single Cell jupyter-notebook paper-replication