Training materials
Contributors: Emma Leith or Erwan Corre or Fotis E. Psomopoulos or Pavankumar Videm or Pedro Fernandes or Robert Andrews
-
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginner10x Single Cell paper-replication -
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Inferring single cell trajectories with Scanpy
• beginner10x Single Cell paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
RNA-seq Alignment with STAR
• beginnerTranscriptomics -
video
RDMbites | Analysis Organisation
-
video
RDMbites | RNAseq data submission: ArrayExpress
-
video
RDMbites | Metadata: where to find published ontologies
-
video
RDMbites | High-throughput sequencing data repositories
-
video
RDMbites | Making code available in a repository