Training materials
Contributors: Eija Korpelainen or Felix Almonte or Hana Pergl Sustkova or Mehmet Tekman or Michael Ball or Michael Krone or Munazah Andrabi or Prof. Tom Freeman or Stéphanie Robin
-
hands-on tutorial
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x Single Cell jupyter-notebook paper-replication -
hands-on tutorial
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
hands-on tutorial
Sequence data submission to ENA
• beginnerENA FAIR FAIR Data, Workflows, and Research -
ekorpela/cloud-vm-workshop
-
tutorial
TeSS, how can I help you?
• beginnerFAIR OPEN Bioinformatics Teaching TeSS -
hands-on tutorial
Hands-on for 'Creating the bulk RNA-seq dataset for deconvolution' tutorial
-
hands-on tutorial
Hands-on for 'Creating the single-cell RNA-seq reference dataset for deconvolution' tutorial
-
Video
RDMbites | Characters to use and avoid in filenames
-
Video
RDMbites | Machine and human readable file naming
-
Video
RDMbites | REDCap: how to run data quality checks